When you invoke GCC, it normally does
preprocessing,
compilation,
assembly and
linking.
The "overall options" allow you to stop this process at an intermediate stage. For example, the -c option says not to run the linker. Then the output consists of object files output by the assembler.
-c Compile or assemble the source files, but do not link. The linking stage simply is not done. The ultimate output is in the form of an object file for each source file.
By default, the object file name for a source file is made by replacing the suffix .c, .i, .s, etc., with .o.
Unrecognized input files, not requiring compilation or assembly, are ignored.
-S Stop after the stage of compilation proper; do not assemble. The output is in the form of an assembler code file for each non-assembler input file specified.
By default, the assembler file name for a source file is made by replacing the suffix .c, .i, etc., with .s. Input files that don’t require compilation are ignored.
-E Stop after the preprocessing stage; do not run the compiler proper. The output is in the form of preprocessed source code, which is sent to the standard output.
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